Journal: iScience
Article Title: AF6 regulates intestinal IgA via crosstalk between intestinal epithelial cells and immune cells in inflammatory bowel disease
doi: 10.1016/j.isci.2025.112658
Figure Lengend Snippet: AF6 deficiency in IECs impairs B cell signaling and IgA production in mice with colitis (A) GO pathway enrichment analysis of colonic tissue transcriptomes in Af6 f/f and Af6 ΔIEC mice maintained on 2.5% DSS for 7 days. (B) GSEA analysis, based on GO, of colonic tissue transcriptomes in Af6 f/f and Af6 ΔIEC mice maintained on 2.5% DSS for 7 days. NES, standardized enrichment scores. (C) Flow cytometric analysis was used to measure the proportion of IgA + B220 - cells in the colon lamina propria of Af6 f/f and Af6 ΔIEC mice maintained on 2.5% DSS for 7 days. (D and E) (D) IgA content was measured by ELISA in feces (after 3 days on DSS-containing drinking water) and serum (after 7 days on DSS-containing drinking water) of Af6 f/f and Af6 ΔIEC mice. Flow cytometric analysis was used to measure the proportion of (E) MHCII + CD11c + cells and (F) CD44 + CD62L − in the lamina propria of Af6 f/f and Af6 ΔIEC mice maintained on 2.5% DSS for 7 days, n = 5–8 mice per group. Data are expressed as mean ± SEM. Pairwise comparisons between groups were conducted using two-tailed non-paired Student’s t tests. p -values were shown in the panel, and p < 0.05 indicates a significant difference.
Article Snippet: CD62L (L-Selectin) Monoclonal Antibody (MEL-14), eFluorTM 450 , eBioscience , Cat#48-0621-82.
Techniques: Enzyme-linked Immunosorbent Assay, Two Tailed Test
Journal: eLife
Article Title: PIM kinase control of CD8 T cell protein synthesis and cell trafficking
doi: 10.7554/eLife.98622
Figure Lengend Snippet: ( A ) Estimated copies per cell of PIM1 and PIM2 protein from published quantitative proteomics analysis ; of CD8 T cells expanded in IL-2 or IL-15 as outlined in . ( B–D, F, G ) WT (Ly5.1) and Pim dKO lymph node or spleen single-cell suspensions were mixed at a 50:50 ratio of T cells, activated for 2 days with αCD3/αCD28 (both 0.5 µg/mL) and IL-2 (20 ng/mL), washed then split into fresh medium containing IL-2 (20 ng/mL) daily (as per ). Some of the mixed cell suspensions were also cultured in IL-7 (5 ng/mL) to sustain a naive T cell reference. ( B ) WT and Pim dKO CTL were treated 1 hr +/- Jak1/3 inhibitor Tofacitinib (100 nM; negative control) before pSTAT5 Y694 expression was measured on day 3 and 6 of culture, ( C ) surface CD25 expression was measured on days 3 and 6 of culture, ( D ) CD8 T cell number vs time was calculated, ( F ) CD8 T cell FSC-A, SSC-A and surface activation markers (CD44, CD71) were measured on days 3 and 6 of culture ( G ) expression of adhesion molecule CD62L was measured daily. ( E ) WT and Pim dKO T cells were activated and expanded with IL-2 as per ( B-D ) and ( F, G ) except in separate cultures and % live cells (PI-ve) was assessed on days 4 and 6 (two-way ANOVA). Symbols in bar charts represent biological replicates, symbols in ( D ) represent the mean. Error bars show mean ± S.D. Data are representative of ( B, G ) n=4, ( C, F ) n=6 or show pooled data from ( D ) n=4, ( E ) n=6 biological replicates with data collected over at least two independent experiments. Figure 3—source data 1. Raw values plotted in .
Article Snippet: Antibody , anti-mouse CD62L (Rat, monoclonal, MEL-14) , Thermofisher Scientific/eBioscience , Cat # 12-0621-83, RRID: AB_465722 , Cell surface stain 1:200, PE.
Techniques: Quantitative Proteomics, Cell Culture, Negative Control, Expressing, Activation Assay
Journal: Journal of Lipid Research
Article Title: A single-day mouse mesenteric lymph surgery in mice: an updated approach to study dietary lipid absorption, chylomicron secretion, and lymphocyte dynamics
doi: 10.1016/j.jlr.2022.100284
Figure Lengend Snippet: Reagents used for flow cytometry analysis
Article Snippet: CD62L (L-Selectin) Monoclonal Antibody (MEL-14), APC (1:400 diluion) , 17-0621-82 , Thermo Fisher Scientific.
Techniques: Flow Cytometry, Staining

Figure 1 A. Data are pooled from 7 experiments, each with n = 4–6 per cohort. (C) Representative overlays of ST2 + Tregs (red) on total Tregs (gray), showing CD62L vs CD44 expression in indicated tissues, pregated on live singlets, CD45 + , TCRβ + CD4 + FOXP3 + cells. (D–F) Left: representative flow plots and histograms showing staining of (D) KLRG1, (E) CD103, and (F) Ki-67 in selected tissues and populations (orange: ST2 + Tregs, blue: ST2 - Tregs, red: Foxp3 - CD4 + T cells), Right: frequency of (D) KLRG1, (E) CD103, and (F) Ki-67 on ST2 + Tregs, ST2 - Tregs, and Foxp3 - CD4 + T cells across tissues. D and F: Data are pooled from 3 experiments of n = 5 each. E: Data are pooled from 2 experiments of n = 5 each, except for VAT and colon with n = 4 in one of 2 experiments. Data are plotted as mean ± SD and indicated means were compared with two-way ANOVA with Sidak’s multiple comparisons test, ns p > 0.05, ∗∗∗∗p < 0.0001. Abbreviations: VAT: visceral adipose tissue, TCR: T cell receptor. See
Figure S1 for flow cytometric gating and analysis of Tregs across tissues and in secondary lymphoid organs. " width="100%" height="100%">
Journal: iScience
Article Title: Profiling of Tregs across tissues reveals plasticity in ST2 expression and hierarchies in tissue-specific phenotypes
doi: 10.1016/j.isci.2022.104998
Figure Lengend Snippet: Frequency and phenotype of ST2 + Tregs across tissues The frequency and phenotype of Tregs from Foxp3 YFP−cre mice were assessed by flow cytometry. (A) Representative flow plots showing ST2 vs CD4, gated on live singlets, CD45 + , TCRβ + CD4 + FOXP3 + cells in blood, spleen, lungs, VAT, colon, and skin. (B) Frequency of ST2-expressing Tregs across tissues, based on gating in Figure 1 A. Data are pooled from 7 experiments, each with n = 4–6 per cohort. (C) Representative overlays of ST2 + Tregs (red) on total Tregs (gray), showing CD62L vs CD44 expression in indicated tissues, pregated on live singlets, CD45 + , TCRβ + CD4 + FOXP3 + cells. (D–F) Left: representative flow plots and histograms showing staining of (D) KLRG1, (E) CD103, and (F) Ki-67 in selected tissues and populations (orange: ST2 + Tregs, blue: ST2 - Tregs, red: Foxp3 - CD4 + T cells), Right: frequency of (D) KLRG1, (E) CD103, and (F) Ki-67 on ST2 + Tregs, ST2 - Tregs, and Foxp3 - CD4 + T cells across tissues. D and F: Data are pooled from 3 experiments of n = 5 each. E: Data are pooled from 2 experiments of n = 5 each, except for VAT and colon with n = 4 in one of 2 experiments. Data are plotted as mean ± SD and indicated means were compared with two-way ANOVA with Sidak’s multiple comparisons test, ns p > 0.05, ∗∗∗∗p < 0.0001. Abbreviations: VAT: visceral adipose tissue, TCR: T cell receptor. See Figure S1 for flow cytometric gating and analysis of Tregs across tissues and in secondary lymphoid organs.
Article Snippet: APC-eFlour780 CD62L Monoclonal Antibody Clone MEL-14 , eBioscience , Cat# 47-0621-82; RRID: AB_1603256.
Techniques: Flow Cytometry, Expressing, Staining